Association Journal of CSIAM
Supervised by Ministry of Education of PRC
Sponsored by Xi'an Jiaotong University
ISSN 1005-3085  CN 61-1269/O1

Chinese Journal of Engineering Mathematics ›› 2018, Vol. 35 ›› Issue (5): 515-522.doi: 10.3969/j.issn.1005-3085.2018.05.003

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Integrated Statistics Pipeline to Mine Key Genes Involved in Tuberculosis from Multiple-omics Data

ZHANG Xu1,   CHEN Dong-dong2,   YE Zhi-qiang3,   LI Qi-ming4,   XIE Jian-ping4   

  1. 1- School of Mathematics and Statistics, Southwest University, Chongqing 400715
    2- Institute of Plant, Chinese Academy of Sciences, Beijing 100049
    3- School of Elementary Education, Chongqing Normal University, Chongqing 400700
    4- College of Life Sciences, Southwest University, Chongqing 400715
  • Received:2016-10-27 Accepted:2017-01-04 Online:2018-10-15 Published:2018-12-15
  • Contact: J. Xie. E-mail address: georgex@swu.edu.cn
  • Supported by:
    The National Natural Science Foundation of China (11701471); the Fundamental Research Funds for the Central Universities (XDJK2014C074); the Basic Science and Frontier Technology Research Project of Chongqing (cstc2017jcyjAX0476); the Doctoral Fund of Southwest University (SWU113063).

Abstract: It is important to define the key host genes participate in the interaction and underlying networks for tuberculosis susceptibility. However, only a handful of host genes have been found and confirmed to date. Two sets of omics data about tuberculosis are analyzed in this paper through different statistical methods such as significance test and cluster analysis. 14 hits are found as most probable genes associated with tuberculosis. These hits were all reported to participate in a variety of important biological processes. What's more, five of them were reported to be directly related with tuberculosis. This indicates that the statistical methodology can be helpful to narrow down the shortlist for tuberculosis disease relevant genes.

Key words: omics data, gene, significance test, tuberculosis, clustering

CLC Number: